Peer-reviewed papers for international conferences

2015

  • Improvement of Reliabilities of Regulations using a Hierarchical Structure in a Genetic Network, Shuhei Kimura and Mariko Okada-Hatakeyama, Proc of the 2015 IJCNN (International Joint Conference on Neural Networks) , in press

2014

  • An Effective Method for the Inference of Reduced S-system Models of Genetic Networks, Kimura, S., Sato M., and Okada-Hatakeyama, M., IPSJ Transactions on Bioinformatics, Vol. 7, pp. 30-38, 2014.
  • A Fast Parameter Estimation Method for Inferring Reduced S-system Models of Genetic Networks, Kimura, S., Furuta, M, Sato, M. and Okada-Hatakeyama, M, Proc. of 2014 International Conference on Information Systems and Computing Technology, pp.45-50, 2014.

2013

  • Development of an efficient parameter estimation method for the inference of Vohradsky’s neural network models of genetic networks, Kimura, S., Sato, M. and Okada-Hatakeyama, M. Proc of the IJCNN (the International Joint Conferences on Neural Networks), 2013. Link

2012

  • Inference of S-system models of genetic networks by solving linear programming problems and sets of linear algebraic equations, Kimura, S, Matsumura, K and Okada-Hatakeyama, M. Proc of the IJCNN (the International Joint Conferences on Neural Networks), 2012. Link

2011

  • AGLSDC: a Genetic Local Search Suitable for Parallel Computation, Kimura, S., Nakakuki, T., Kirita, S. and Okada, M. SICE Journal of Control, Measurement, and System Integration, 4, 105-113, 2011. Link

2010

  • Effective Parameter Estimation of S-system Models using LPMs and Evolutionary Algorithms, Shuhei Kimura, Yusuke Amano, Koki Matsumura, Mariko Okada-Hatakeyama.
    Proc. of the WCCI 2010 (IEEE World Congress on Computational Intelligence), 2010. Link

2009

  • Inference of Genetic Networks using Linear Programming Machines: Application of A Priori Knowledge, Shuhei Kimura, Yuichi Shiraishi, Mariko Hatakeyama. Proc. of the IJCNN (the International Joint Conferences on Neural Networks), 2009. Link

2007

  • Inference of Genetic Networks using a Reduced NGnet Model, Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Kotaro Yoshida, Koki Matsumura, Mariko Hatakeyama. Proc. of the IJCNN (the International Joint Conferences on Neural Networks), 2007. Link

2006

  • Function approximation approach to the inference of normalized Gaussian network models of genetic networks, Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Koki Matsumura & Mariko Hatakeyama. Proc. of the 2006 International Joint Conference on Neural Networks, 4525-4532, 2006. Link

2005

  • Inference of Genetic Networks using Neural Network Models, Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Koki Matsumura & Mariko Hatakeyama. Proc. of the 2005 IEEE Congress on Evolutionary Computation, 1738-1745, 2005. Link
  • Software-aided mass spectrometry analysis for identification of protein-protein interaction in signal transduction pathways, Aki Hasegawa, Kazumi K. Matsumura, Xiaomei Yu, Mariko Hatakeyama & Akihiko Konagaya. Proc. of the International Workshop on Biomedical Data Engineering BMDE 2005, 44-51, 2005. Link
  • Genome-wide Functional Annotation Environment for Thermus thermophilus in OBIGrid, Akinobu Fukuzaki, Takeshi Nagashima, Kaori Ide, Fumikazu Konishi, Mariko Hatakeyama, Shigeki Yokoyama, Seiki Kuramitsu & Akihiko Konagaya. Grid Computing in Life Science, First International Workshop on Life Science Grid, LSGRID 2004, Lecture Notes in Bioinformatics, 3370, 82-91, 2005. Springer Press. Link

2004

  • Parameter Estimation for the Simulation of Biochemical Pathways, Shuhei Kimura, Mariko Hatakeyama, Takuji Kawasaki, Takashi Naka & Akihiko Konagaya. Proc. of 15th IASTED Int. Conf. on Modelling and Simulation, 266-271, 2004. Link

2003

  • Inference of S-system models for genetic networks by using a genetic local search, Shuhei Kimura, Mariko Hatakeyama & Akihiko Konagaya. Proc. of 2003 Congress on Evolutionary Computation, 631-638, 2003. Link